Geoduck 10 Day DMR annotations

Here is an attempt to annotate about half of the 41 DMRs Sean has identified.

tldr: Many appear to be in gene bodies. Some need investigation as seems like data might be missing. Some annotations…

P04323.1  RecName: Full=Retrovirus-related Pol polyprotein fro...  90.5    1e-19
Q7LHG5.2  RecName: Full=Transposon Ty3-I Gag-Pol polyprotein; ...  73.2    1e-13
Q8MR37.1  RecName: Full=Krueppel-like factor luna                  50.1    3e-05
Q7JQ07.1  RecName: Full=Mariner Mos1 transposase; AltName: Ful...  92.4    1e-19
Q53H47.2  RecName: Full=Histone-lysine N-methyltransferase SET...  72.4    2e-12
P35072.1  RecName: Full=Transposable element Tcb1 transposase;...  36.2    0.33 
Q8NGE2.1  RecName: Full=Olfactory receptor 2AP1; AltName: Full...  31.6    9.1  
Q0IIX9.2  RecName: Full=Tuftelin-interacting protein 11; AltNa...  106     4e-24
A1XDC0.1  RecName: Full=Septin and tuftelin-interacting protei...  70.5    4e-12

full BLAST annotation output: http://owl.fish.washington.edu/halfshell/index.php?dir=working-directory%2F17-02-07%2F

Location of 41 DMRs

scaffold103946  20422   20422   -0.1859
scaffold106982  14135   14135   1.451
scaffold107590  8577    8577    0.5295
scaffold112102  14447   14447   2.266
scaffold116821  17  17  0.6799
scaffold11815   14456   14456   3.786
scaffold11917   28699   28699   0.2738
scaffold1242    12404   12404   0.5895
scaffold126195  1416    1416    -1.394
scaffold128214  5365    5365    0.1436
scaffold129719  11544   11544   0.305
scaffold129719  11591   11591   0.3073
scaffold130369  15322   15322   0.2887
scaffold13704   29380   29380   -2.035
scaffold147711  174 174 0.2606
scaffold16116   7076    7076    -0.1679
scaffold176442  9109    9109    -2.641
scaffold180853  5067    5067    1.867
scaffold193328  3840    3840    2.474
scaffold20564   10594   10594   0.5333
scaffold21816   40741   40741   0.6428
scaffold21816   40765   40765   0.6775
scaffold26891   2783    2783    -0.9512
scaffold27468   17795   17795   0.4412
scaffold28099   1642    1642    0.4073
scaffold3069    4606    4606    -0.5935
scaffold30780   3832    3832    0.3615
scaffold318488  1576    1576    1.808
scaffold318488  1652    1652    6.167
scaffold3339    18557   18557   0.5385
scaffold3339    18559   18559   0.4022
scaffold420603  1339    1339    1.677
scaffold42112   6026    6026    -3.169
scaffold45108   21939   21939   5.189
scaffold5159    16185   16185   -0.4887
scaffold5906    3325    3325    -0.4556
scaffold59568   151 151 0.5148
scaffold62783   8660    8660    -0.73
scaffold69655   10128   10128   0.2736
scaffold8586    14161   14161   1.713
scaffold92878   9598    9598    -0.3131

Key

Geoduck_10_Day_DMR_annotations_–_quarter-shell_–_Staging_for_my_Lab_Notebook_1E4A405A.png

scaffold103946 20422 20422 -0.1859

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E452A9A.png

>scaffold103946-20422
TGTTTAGCCAAACATTGTATTTCTAGCGCGTCTCAGACatttctcaattccacagtgaccagtatgtagaatgttaagcatacttgttcttaatttcgaaggaatgattaacctttgacccttgaagataatgtcgtccatgacactgagctcatctctataagtccagtaatcatgtagctgggtagggcaatctgagcgcttttccggccaacctgacaaaataacctgttttagatgtactaactcagggtcttgacctgtgtgtaatcttatctcgtgtaactttctgtcactatacggcaagtttgttgtgacaaaatgtacatgaaggtttgttgcttcggacagttctggatatgtgttgggtagaaattttcttgagagggCATCAGCCAGAGGTATTTGAGTTCCTGGTCGGTGCTCTAAAGcgaagtcataaccttgtaatcgtaacatcatacgttgtaacctagctggtgctacatagattgcttttttcatgactgctagaagcggtaaatggtcagtatgtactgttatatggcgaccatatacatattgtctaaacctagtcatgccaaatagaatagcgtatagctccttttctatttgtgcccaatttatctcaaattgtgtaaATGACTTGCTTGCGTAAGCTATTGGATTACCGTCTTGTAACAGTGTTGCGCCTAGAC

https://www.ncbi.nlm.nih.gov/protein/762126478?report=genbank&log$=protalign&blast_rank=1&RID=99X0FZ6X016

scaffold106982 14135 14135 1.451

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E452C1E.png

>scaffold106982-14135 
NNNNNNNTGTCTACCGATAAACAGTCAATTTTTATTGGCAAAGGTCAGGGAACCAGACTATGTTTTACATagcagttacttcccttagatttgtttatttcatggtgtctacttccgttgtgaaaaccccggtctttggaaatacgatacgcacaagatcgccaatgaaatgtttgaattcaattgtttatgcgtaccggtacgcacatttattattttcaatgctttttttgtcaatttcaatgcttatttacgcaaatactcaccttatctggagcactgCATACGTATCAATAAATCACCAATTAACTTGTTTGACACACATGCAGTTCTCACCATGGGTG

scaffold107590 8577 8577 0.5295

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E452CB8.png

>scaffold107590-8577 
AGTAAATCCAAGCTTTAGCATTTTGTCATTATTTGAACATTTGTCCATACTGATTAAATTAACCGTCCAAGCGTTCATTCTTGGGTGATTTAAAATTGATTTAAAGACGATTGCTGTAGTATTTTACCTATGGATAGAAATTTCCAGTATCTTAGTTAATTATATGTTCCTACAATATCAGAAATAAAAAAATACATGTTATCGTACAGATGTTTTGGTATAAACATACCCGCCCTTGAAATAATATAGATTTAACAAGTAATGTGAAAAAGATATCTATTTTTATACCCCCGACAAACGAAGTTTGaggggggatattggagtcaccctgtggtcggtctgtcggtcggtctgtccgttgcaattttctttgtccggagcatcacttgaaaagtactggatggaatttcattaaacgtcatacaatggtagaatataatgagaggaagtgcagtgtataagaaacataactctattcttgctaattacagagttatggccctttgatatgtttcattttcttgatcataacttgtaaagtacaggattgaatttaatctagcttcatacatttgtagaatATAATGAGAGGAAGTGCAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

scaffold112102 14447 14447 2.266

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E452D1C.png

>scaffold112102-14447 
TTTAAATGAGAACTTTTTGTGTACACTTTTTTACATCCAGTATAGGGACACTTGTGATTTCTACGCTTAACATCGGGACTGATATCACACTGTCGGACAGAGTTAGGTAGAGGGGGTCGCTGGGCCAGTGTCTGACCCTGAATCTGACCCTGTGTCACATGATTGGGAGGAATTTGAGTTGTATGCTGCGCGGTGTACGGCCGCGATCTGTTAGCACTAGCAGAGTGTCCGCTGGGTAAGATAATCCTCTGTTGTTTGTGTAGCATGTCAGCTGCATGAACACGCACAGCCACCGTGTGTGTACGGCCAGGCTGTGCTACAAGTCTCAGTGCGAAGGGGTCATTGGATTTTGGTGCGATCGGGGACAGAGGAGGATCACTTATATTACTATCCCATGAAACACCACTACTTGATGAACTAAAACTATTTAAACTGAGATTATCTGCTGTCCGATCATTTAGATTTAAATGTGCTAATTCCTCAAGTCTGTCCTCAGTCTCTGTCAATTCTCCTTCATCATCCTCATCCTCACTTAACGGTTCCGGAATTAACAAATCCTCAAATTCGTCTTTTATACAACTAAGTGCACCACACGCTAAATTTTCAGCGTTTTCCTGATCTATTAGCTGACATGGACTCGTTGGATTTGAGTCCGCCATCCACGCCTGTCGTGGCTCTTGTTTACAATCCTTGAGTTTTTTAAAAGACGTAAGTTTTGGTTCATTTTTCAGGTATCTTTCCATTTCCAGGCAGTTCTGCAAAAGTAGAAATAAACAAGTTAAGACAATGTTCGAAAGTATTTCTCGACTTATTTTTGCCGAAAAAATTACAAAACATGATATAAAAGCAAATGCTTTTTAATTTTTCCCTATTTTTCTTGTTACCTAATATAACTGTGATACTTTATCAATAAATGAGAAACTGAGTGCAAAACCATCATGCTGAATCACATTCTGGACTGAGTACCAAGAAGCGGACAGAGAACAGAGTAGCGTAGGATAACCCTTTACTTCATATAGACGCCtttggacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaatgaccttctgtgattggtgcagaaaaacgtgtatctatgaagtaaagggATAATGGAATTGACATCAGAAAGAGTATTAAATGACAAAGGAGACAAAAATAGGTACAACAGTTCAGGACTGCAGTGCTAATTTGAAGCAGAGTGTCTATGGCATCACAAGACATTCCGACTTTGTCACGCAGGTTACTGGAAAATGCAACAATATACGATAGGATGTCAAATAAGGGCAGAAACTCAATGTTTTTGTTTTATTTTTACTTTTAGCAGAAGTGGGTTGGTGCCTTTTAAAGGGGGAAAATGAGTGTAAATTGGAGTTCGGAGGAACTTTAATAGGTGGCAAAATGAAATAAAAAAACAAAAGAAATCGT

scaffold116821 17 17 0.6799—

sr320’s_iMac_1E493C15.png

scaffold11815 14456 14456 3.786

sr320’s_iMac_1E493C96.png

>scaffold11815-14456
CCTGTTGTTCTGTTTATCTAGTCAACAATAACTGAATCACTTATGTTTGTATTATTTATATATTAATTATATCTGATGCCAGAACACATTAAACATGTTCTATCTTATAATCAGGCAGTAGTGCAGTGGATATAGTGATGGCCACTCATGGAAGAGATGGCGAGTTCTATCATAGGCACTACCTGATGGCCTCTCAAAACTAGCACTTGATAGTGGATCTACCTTGGAAACATACTCAAACAATTATAAGCTTGCAGTTTTCTTCACAATCAAGCACAAATAAATGAAAATTAAATGACAATAATTATTTACCTGTAGTCAATCTCTCCCTGGGCACTTGCCCAGCCGCCTCCATTGGAATCAATCTGCAATAGCTGATCGAAGTCTTTCAGATCCTTGTCCGAGATGATAGCAGGTCTTTTATAATCATCACCCTTCTCATCGTCTTCGCCAGATTTTTCACCGCTGTGTCGTTGGGGCTGTATGTGTGGTGGCGGATGCCGCGGAAATCTTAAATCATCAAAATTCAGATCAGTTCTCACTACTCACATTACATTAGTTACTGAAGGAACAAAAACTTGATGTGCGTATAAATGCCGCTTATACATATTTTATGCCTCAAATATGAAATTTTACACAATCTTTTTATTTTAAGTTGCTTATTTGCAGTTTTTTTATTTAGTTCAACAACGTGTATCTTATTTTTATTCCAAAAAGCACACAAAAAATTATAGACCACCTTCTTATTAGGTTAACAATACAGATATTTGAATTAAAAAAGAAACAAGATATGTCACTGTTAAGTGTCAGATGCCCCCTGAATGGTCTGTGAAAACACTATATGTAGTGTGAATCCATGAATATCAAGAGTAATGGACTgacatttcagactagacatgcaatgtcatgttttttttacattaaaACACGACATTGACCTTTGTATAACCTTGACTTTGACATCtgatgtaacagtcttggtatttctacag

scaffold11917 28699 28699 0.2738

sr320’s_iMac_1E493DD8.png

>scaffold11917-28699
TAAAGTGTATGGATAAATTTTGCttaaaaTTCTCATAAAATACACTCTGATACCCATTCTACTGAACACCAAAATAAAAAAGAGAATATCGGTGGAACCGATGGAGGCTCCCCAAgtgagagtttgactctgtaccggctacttggttgaaaaatactaaactgcatagcaggtaatgatgcatcctagcaagtttcacaaaattccaacatgggtttgtaCAGAAATAGTGCGGGCAATAATTAGGTCATAGTCTCAATCAAAGGGCCATAACTCCCTAAAAAAACAtcgaaccggaacacatagacaatatgcgcatctggacttggtaatgatgcatccaagcatgtttcataaaattccaacatagggttgaagagaaatagcgcggacaataatttggtcatgaatagaatcaaagggccataactttgtgaaaaatcaacgaaccgaacacaaagacaatatgcCCATCTGCATTGGTAATGATGCATCCTAGAAAGTTTCATaaaattccaacatgggattgtagataaatagcgcggacaagaatttgatcacaaattgaatcaaaggaccataactccatgaaaaatcatcaaaccggaacacaaagacaatatgcgcatctgcacttggtaatgatgcatcttagcaagtttcacaaaattccaacatggggctgtagagatatagcgcggacAATAATTTAGTCACTGACTAAACTAAAGGGCCATAGCTCCGTGAAAAATCACCGAaccagaacactttgacaatatgcgcatctgcacttagtaatgatacatcctagcaagtttcataaaatttcaacatggggttgtagaaaaatagcgctgacaataatttggtcacagacacaatcaaaggCCCATAACTTCGTGAATAAACATCGAACCGGTACGCATAGACAATATGTGCATCTGCACTTGGTAAtgatgcatcctagcatgtatcacaaaattccaacacgaggttgtagagaaataatgcggacaataatttggtctcagactcaatcaaagggccataactccgtgaaaatcaccaaaccgggacacaaagacaatatgcgcttcggcacttggTAATAATGCATTCTAGCAAAGTTCATGAAATTCCAACATGGGGttgtagagaaatagcgccgacaagaatttggtcatgaatagaatcaaagggccataaATCTATGAAAAA

scaffold1242 12404 12404 0.5895

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A2F48.png

>scaffold1242 -12404  
CATAAATACAAACATTTTTTTCAAATACTTTTTTTTAAAAAATAATTAATGTTAAATAAAACCTAAACTATCATTTTCTGAAAATTAGCTAGTACAAAGCGATGAAGCAAGACCCAGGCACACAGTAATTCAGGAAATAGCAAATTTGAAGCATCACTATGTTTTACAAGGCAAATGAAATCTTTTTAACAAGAGGCCCAAGAGGGCCTGAGAACGctctactgactcatgaaccctcggggcggggtcatatttaaccctagggacaccatttgaacaaatctaacaatactatagttggtcgtcattactacataaacattttgaaaatctgttgggccgttcatgagaagaagattttttaagttttggactatttttagtaatggcagccatcttgaatttcagatcgaaaaaaaaaaaaatcttctgtatagtctcctatgcaacagaaacaagcatgtgaagtttcagtttaaATGGCCTATGGTTTCAGAGAAAGTGCTGCTAACagacgacagacgacggacgacggacaacgcgccatcgcataagcacttttggcctttggccagtagagctaaaaatgaaaaccaGTTCTTTCTAACCAAATCTGGTGCCAATGATGTAAAACTCTTGAGTTTAAGCTCAACTGAGTTTATTCTCATTCAACCAATATAAGCCTTGCTTTAATTGGAACATGAATTTGATTGGTTGGTTCAAGTGACACTCAGATACTTATGACCTCAGTATTTCTAcgggacatggtcagacttttttacagttGAATAGCATAAAAAAACTGCCGAGACCCTTTAACCAAGCCCCTATAAACAATCTACTACGTCTGACCATAACGAATCTGACACCAATCTATAGAAC

scaffold126195 1416 1416 -1.394

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A2FE0.png

>scaffold126195 -1416
AAGCAGTTGTCTAGCTTGCTGCTTCTTGTTAAGAGTCATGATAACTGGAAGTTTGTGACGCCTTGCTGTATATTATTTCAATATACATAAGTATAGTCAGCAGAAAATCCTTTTTTAGAGATTTTTATGTATTTATACCCCTATCTGTAATAAGAAATGCTCCTATGCACGTAAGAACCTATTTTCTCTAGTATCCAAATCTTCTTCAATATACAGGAAAACTACAGTAGAACTTCGATAGCTCAAACTCGATtggctggaacaccaccgattgctcgaacaactaacccCGTCCCCGCCAATTTCCTATTTAATTTCTATTGTTCTACCACCGatggctagaacactgataggtggaacagtcaaactagaaattaggtcccgccaacacacttacctgtgtttttcgcacctttccgtcgaacagctgatcaaagataaagaaaatcagagaagtttgccatgtttgttcaggcattcaaaggtgtgaagtaatttctacacttcataatatccccactgtcttaaagagcgaGAAGTTTGTCATGATAGTATGGCGAGTGTGTTTATAAGTGGTTACACGTTTGTTTAATTGTATACCGCAtgttgcataaattaagttaatttgattcttaatttgatgtttatttgtaatttaagatgaaatcaaaagaaaacaaatttatattgcaaacattgaaaagtaaaaagtgtcacatacaatttttccctataaatcttagacatgggaagttcagtctcattgcacaatgtggcatttaacaacaTGTTTACCTGAAGAAGAAACAGCTGAGCAACTTagtgacggacccggtaaccgggggatagctaagtcagcctctttgacgattgccgagcaacttggtaaaggacccggtaaaaccggagtgtgattatcatgtcatttacattctcacgcacaccgaaagctaaatataactatttatacatctgttcaaagcgtacacatgggactcAATA

scaffold128214 5365 5365 0.1436

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A3028.png

>scaffold128214-5365 
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACCTGGACCGATTTTGTTTTGATGTTGGGACAGGTTCTGAATGATTTATTTTGGTggttgaactgttacttcggtttccacggtgattgtttcacgcagcttccggaacATGCATCATTTCCGGTTCAATCGATCATTTTTAATATAATgaaaattattcagtaacgcggaaacataatgtcagtcattaaaatgtacacattgtggtaaagtatgttataaataatacacaaataaacttgaaatcgttccttattaataaataaacgcagaaaatagattatgctgctgacatggtgggtggggtatgcatacatgtaaaggcataatgtaaggcaatttaagtgatttttttttaaataagtgcaattcttacggtagtaaaaaacctggaccgatttgcattttggaattttagaaggcctgattcaAGGGGTTTGGTTCATATTCCACACAATGATAATGGACATTGAGAGGAAGTGCATTGTCTAAGAactatagctGTACTTTGCCCTTTTTTTAGTTATTTCCCTTTATTATAATTTATTATGCTTGTCCAGGACATAACTCAAAACGTGCTTAAGAGATATAGTTGATATTTCTCACAATTATAGAGGACAttgagagcaagTGCAGTGTGCAAGAACCGTAACTCATTCTTTTGTCTTTAAATAAATTA

scaffold129719 11544 11544 0.305 scaffold129719 11591 11591 0.3073

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A3092.png

>scaffold129719-115XX
GGTCGTCAGTTCGAATCCCCGCCCGGCAACAGtctccgtaCTGATTAATTTACGACGTTACGTCATTAGTCTCTCATTAATGATTCAAGTGCGACAGTTATCGATTACTTGCAGACATGAGTGTGTTCGAATATTGGTTAACCTTTTAGGATCCCAAGAAAGAGTggttaTATTAACTGTTGGCATGATAGATGGCATACAATAGCGTTAAATATACAAACAAACACTATTTAAATAAAAATTACACTAACGACATGTTGGTCAAGTTGGCACAGTGAGGAGTAAGCATGTAAACCATTATTTCTTACTTTGGAGATTCGAACCCACGGCCCCTGcggcgtcagcgcctagcacattaatgacgacgtttctaccgactgcgccatcgcaacaacgccaaaaaacgttgcgcaaatagcgcatatattggcgccgccattaatgtacacaggacataggcaggatttataatatttacattcaatatttttgtatACATAGGCAGGGGCCGTGGGTTCGAATCTCCAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

scaffold130369 15322 15322 0.2887

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A30DB.png

>scaffold130369-15322
tgattcaagtggggaaaATCATCAGTTATTTGCAAAGATGGGGTGTAATCAAGTACTGTTTAACCTTCCAGGACCCCAGAAAACAGTGGTtaggttaactgattatctgttagccctcaatcgcataaaaatggcgctaaatattcaatcaatcaatcaatctaaataaTCCTACCTTATACAATTGTGCCAGAGTTATAGTACAGAGAGTTTAAACATAACAGCCTAGATCATAATTATCTGCATATAGGGTAATAACAGCCTAGATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATAACAGTTTTACACTAACATTTATTATATGGGCTACAATTACGAGCCGGTCAGTACAGACCTGAAAGTTAAGGTTATCTCATTATGGTGAATATTATTTCAAAATATGTCAAGTTGTTTACAAACATTCAGGGCTCGAATTTAAGCACTCGCCActcgcaaaatgcgagctgtattttgaaaatgtgagttgaaattacttaagctggcatttttttgcgagtggatttcaagttgagaaaattactgattgtattcattttattgttttttgaaaataaacaagtattatccctgtaaaaataacggattcttgtcaattttaccaaattaccccctggcagcatgattgtcaatgacatgtattaaatatttaatatgtgtagactgcgtccaattgtttttgatatcgagttcattctgcaaaaaggaagtaaagttaaaacccgtcaacaacataatgagtagactgcgtctaagtttgatcgatcgtgcactcactctataaaataaaagttaagttgaaaccaATCAACTTTATTTACATATTTTGTCAGCTGTTAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

scaffold13704 29380 29380 -2.035

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A3145.png

>scaffold13704-29380
ACATAGTGCCAGCAGCAGCACTGGAAATGCGCAAGAAAACTGTCACGGTGTTTCTAGCTGTCAAATACATGACTCGGTTCCTTTATTTAAACCAATCAAAATTCATCCAAATGAAAATGGGCGGCAGCCAATTGTGTCATACATTCATAGAAACTCAAGCAAACATAAATCATTTAATAAACATAGGAAACCTATTCCTTCTAGTCAACATTACAATTCTGGGCTCGAATCTCATAATAATATTAATACAATATCTCAACTACAACAGCAACAACAACTACAACATCAAATCCAAATTAGTCAATCGAGCCATGTGGCCCAGAGCACGGCTCAACCGTGTTATAACATTCAACCATTCAGCAAATCAAATAATGATGTACACGGGAGCCGACTCCACAGTATTGACAGTCACGTGCAGCCGCTCTCTAGTGTCGGTCATTATGGTCTGAGAACAAGCATGAGTGATCACTGTGGACACGTGCACTCGAACGGCTACTACAGCGATGGTCACTTGAGTCAACCAAACAGTATTGGGTATGGAAGTGATTACAATAGTTTAAATGGACAAGGACCTTTGCACAGTGCTGGCTATAACATAGGCCCCGGACAAGTAAAAAGTCATCAACTTTGCCATATACCAGCCAATCAGTATCCTGTATTGAACAACAAACATCCGGTGTCTGCACACATTCCAGGATATAATATATCAACTTCAAGTCACATGCGCCCAATAAAACTGGAACTAAGCATGCATAAATTCAGTGAACCATTACAAACTGTGTCAGAATCCCCTTTGCCTCTCAAAATAACACAGGCTATGGTGCACAGACCCTATATTGAGGAATTAAGTGATCCTAAACTGTACTCCGTTGTGTGAGAATAGTTAAAGGGAGGTAAATGACTAATAAAGGGAGATAACTGACCAAAAAAAAGGGAGATAATCTAACTCATATTAAAAGTGTGTTCATATCGGATATACTATAAAGTTTGTGCTATATGGATTTATTTATTTTTCTTTACAAGGATAGATAGAGT

scaffold147711 174 174 0.2606

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A3183.png

>scaffold147711-174
AGTCGTATTATCGGGTATGTGGTATGAAAAATAACGCAGGGGTCAATTGTTTATACTGATTAgttacggtctttgaacaacagtttgacatgtgtcgtttcgaatagagatatttgcagacctgtgtattgtgaaaactagcttgtccgattttttaagacaagcccgacgggcaagtagctttgaaaaaggcacatgcccggatccagatttgacaagccccgggcatcgggctatcctattcttggagcactgtatctCTCTACATTTGTGTTCCAATGTAATGATAATTAAACTTTAAAAAATAATTTTCGCATGAATAGTATaaataaaaatgggattaagaaggctacaattatatagatgtatctcctgtattttgtattaaaagcaaaCAAAACGATTTTTAAATTAAGTGTATTTATAGCTAGTTTGCgatagtatg

scaffold16116 7076 7076 -0.1679

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A31C1.png

>scaffold16116-7076   
TAGGTTTACTGAACATTCAGCATTCATGATGGTGTCTTCCCGTTTATTTGTTTTTAGTAGTGCATTGTTCAGCTTTGTCTGACATTTCATTATCAAGAATATAAGAAAGTCCGGTTAAGTTTGAGGTTTTCACTGATGTATGTTCAGAAATATTTTCGTGGATGGTTAATTCTATTCGTTTTATCTCATAAATAGTGACTTTATCAAGGGCTTATATCATACACCTTACAGAGAACCGAGCATATAATCTGAACATGCATAAACACGCTCTTCGTCAACGTCATCGTCTTGAACTCTATGTTTTTTCCTTTGTCTATATCAGCCTTTACTTTCCCTGTCTTTATAAACATTGCCATACGAGGGGCATTTCAAAAGTAATGCAactggggtagtataaagcgcgcgtttgatagatattaaattatttacgcgtcatgccctcaaagtaatcacccttgttacgtacacaaagtttcaaacgtttaatccagttcttaaaggcatcttcatactcattttcaggtatacccagcatacactgataaacagcggaccccagggcctgtcgggacctataccgtctaccagctaaatgttttttcagtttagggaacaagaaatagtcacacggggctaggtctggggaatatggtgcatgtggaagaactcgaaCCCTTTCCTTGTCTAAAATCGAGGTCACAATAGCAGACTTATGCGcaggggcgttgtcatgcaacagggataggtgctttaagccagtgtgtgggcgacgtttgaaacattgttttttaagtttcttcaacactttttctttataaaatatgccagtaacagattttctatttggtacaaccagttgcataataggaccacatatatcaaagaaaataacaaacattgctttcttagcactgatcaatctttttgcaattgtCGGGCGACAGTTTTTGGTAGCCCATATTTTGTTgttattttttctggtaggctcgaaaaagtgtacccatgtctcatctccagaaataatgtcagaaaactgctttcttaggtattttggaaacattttaagcagttttctggcggtttcaagtcggacacacttttgcttgtctgaAAAACAAATGAGAGATCCA

scaffold176442 9109 9109 -2.641

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A320F.png

>scaffold176442-9109
CGATACACGATCCTCAGGTCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGCCAATACATGATCCTCGGGTGAGGCCGATACAcgctcctcaggacagacagatacgcgatcctctggccgatacaagatcctcaggccgatacacgatcctaggcccgatacaagatcctcaggcaaatacacgatcctagggccaatacacaatcctcaggtcaggctgatacacgatcctcaggccgatacaagaCCCTCAGGCCGATACATGATCCTCGGGCCGATacaagatcctcaagccaatacacgatcctTGGGTCAGACCGATACACGATCCTCGGGCCAATACATGATCCTCTGGCCAATACACGATCATCAGAACGATACATGATCCTTGGAATGATACATGATCCTCATGTCAATACATGATCCTCAGGCCAATACATGAtcctcaCGTCGATACCCAATCCTCAGGCCAATACACGATCCTTAGGTCGCTACACAATCTTCAGGTCAATCTTTTTATTATGATGTGTTTCTCTTCTCAAAATGGTCAAGCCGCAAAGCTGCAGGGTTGGTGTATATATATATACATAGGGTATTGCTTAAAAAATACACCAGGTAACTTCAACTACATTTACTAAAACTGTCTGCCTTGAGTGTTACACTACCCATTCTGATTTTTTTGGTCGCAATCAAATATCCAATATAGCAAATCCTACTTTCTCTGAAAGTGCTTTTTTGAAATCGTACTAGAATGCCAGAATCGGCCCTCTTGTTTAAAA

scaffold180853 5067 5067 1.867

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A328F.png

>scaffold180853-5067
GTTGATCAATTTTAAATCACTAATATTTAAAAACTGAGGAAGCAGTTTTCTTCACAAGTTGTTGACTGACCGATAAACTGGGGGTATAATGAGTATTTAAGGAGATGAAGCGTGGACAAAAGTGACTATTTTACATCAATGAAAGGGGCATAACTCTTAAACATCTGGAAAAGGAGAGTTGTAACAACTTCTGTGAAATTATTGCTATAACATGTAAGTTGTTGTCACTTAAAGAGAACTGATAGATCTGGAAATATTGACAACCAGCTTTTCAATTTTGGGTGTAAATAACGTTTTTATCAATCACATGTAATCTTATATGGCAGTGAGTAACGAGACAACTGTAACATCAGGTGGTACAAACCTAGTGTCTGTTGATGAGGGTTGATAGGGAACTCCTCCAGGCACATGGCCAACTTGGGTAGAATGTTTTTTCTGAGGAACACCTCCATGTGGCCGTCACGGAACACGCCAAACCACGGCTTCAGGATCACCTTGGCTGAGCTGTCAGAGGGATGCCAGTTGATGAGGGCATTAGCAAACTTGTGTCGGATAGGAGCATACAGTGGTTCCATCTTTTCACCTAAAATGAGACATGAGCTTGAAATAAAATAATTGAATAGTCAGTTGGTCAGCCCAAACTTTAATGCTATATAAATTGCTAAATGGACGTTATAAAAATAAACAAGAAATGTCACTAGTAAGTGTcacatgcccccacaaatggtctgtgaaaataatgatatattttataataagCAGAGATTTAAATGTATTCATAAATATCAAGAGTAatcgactgacatttcagactagacacgcaatttcatgttgtATTTTTCATTAAAATTTGACCTTGACCTTTGTGTGACCTTGACCTtgacatctgacataaaggtctgggtatttctacaggtaaatgcaggtgacatatcatcatgacatattgttcacttgtgtcaagatattttaaaatccctccatgtaCTACAAAGTTACAGACAAGGCATGAA

scaffold193328 3840 3840 2.474

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A32DB.png

>scaffold193328-3840
GATCCTCACTTCCGTATGTACTTGGTGACTGGCGTGTCAGAGCTCTGGCTACCTCCTTGTCAGAATTAATACTACTTGCCCGACTTAAAGTTACTTTTTTTCCTTGAACTGTTTTAGGTGAATGTTTCCTGTTTTTCTTTGGTCTGACTAAATTAACAAATTCCTCTTGCAATGATTTTGTATCAAGTGTATCAGAATCGGACATTCCGCTTTCTGCCTCAGTTGTGCTTGGCTCATACTCAAATACACACTGTGGTGCATTCTTACGATCCAGAACCCCAGACAATGCTGAAATTGCTCTTTCTCTACCTTCACTGTGACTTCTCTCCACCTCCACTGACCTGGGTCTCTCTTTCCCctcactgagacttctctcaatctcatcctttaTACTCGCTTCACCTTGTCCAGACAATGCTTCCGACACAGCCTTCTCCACACTGTCATAGTAACTGATCTCTTCTTCAATCATATTATCTATATCATCAATATCATTGTTGTCATCGCCGTCATTATCTTCGCTTTCTCGTTCATCTTCACTGTCTTCGTCCTCCTCCTGATATCCATCTATTAAAGGTGTCGCCTGTGTATGCCTCTCTCCAAGGTCTATCACGGTGCTAAGCGTTCCGGTCAAGGTTTGAGTTCCTGTCAAGGTATGGTTTTGGGTTTCCAGTAAATCATTTATAAAATTACCAGAAAGCATCCCATCTATATCGTCTTGGTCCAGTGTGTCACCAAAGTTTCCATGGTTGCTAAGACTTCCTTGACGACTGATTTCAATTTTATCAATTGTATCATCTTCGCTATCAAAAGCATACTCATCTCTTTCATAAGCTGCATCCCCTCTAACAACACCTTCAGTTTTTATCTTTACATTTGGTTTTGTCTTCTGGAAACTGTCAGTTTTCATCTCGCTTTCACTCATTTCTGTTTTCTCCTCTTCAATAACTGCCATTGGTGTTTCCATGGCAACACTACTTGACCTTGATCTTTGGAAACTAAAATCTGTAGACTCATTTAGCTCGTTGATAACAAGAGC

scaffold20564 10594 10594 0.5333

IGV_-_Session__http___owl_fish_washington_edu_halfshell_igv_session-EPI-010217_xml_1E4A332B.png

>scaffold20564-10594
ctgctgctaTGAAACCAGCAGTATAATATATGCTGCTATGAAACCAACAGTATTACATCTGCTGCTATGAAACCAGTTGTATTACATCTGCTGCTATGAAACCAGTAGTATTACATCTGCTAAAAAAACAGCAGTATTACATATGCTGCTAAGAAATCAGCAGTATTACATCTGCTAAGAAACCAGCAGTATTACATTTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTACATCTGTTGTTAAGAAACCAGCAGTATTACATTTTGCCAAGAAACCAGCAATATTACATCTGACAataaaccaacagttctacagctgctgctaagaaaccaacactattacatctgctgctaagaaaccagcagtattacatatgctgctaagaaaccaacagCATAACATCTGCTGCTATGAAACCAGTAGTTTTATATCTGCTACTAAGAAGTCCCGGCGTGGTCTAGTGGTAGAGTGTCCGCCtcgcatgtggaaggttgtgggttcaatccccggccgggtcataccaaagactttaaaaatggtaccagaagcttccttgcttgatgctcagcatttagaggagagttctaggtctagtcggcccggtgtcagtataatgtgattgggttTGGTATCATACCATGTGTCTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACCAGCAGTATTACATTCTGCCAAGAAACCAGCAATATTACATCTGACAagaaaccaacagttctacagctgctgctaagaaaccaacactattacatctgctgctaagaaaccagcagtattacatatgctgctaagaaaccaacagTATAACATCTGCTGCTATGAAACCAGCAGTATTATATCTGCTACTAAGAAGACCCCGGCGtggtctagtcgtagagcgtctgcctcgcatgcggcaggttgtgggatcaatccccggccgagtcataccaaagact

Written on February 7, 2017