Assembly Comparison - Oly PacBio Canu: Sam vs. Sean with Quast

I recently finished an assembly of our Olympia oyster PacBio data using Canu and thought it would be interesting to compare to Sean’s Canu assembly.

Granted, this isn’t a totally true comparison because I think Sean’s assembly is further “polished” using Pilon or something like that, but the Quast analysis is so quick (like < 60 seconds), that it can’t hurt.

See the Jupyter Notebook below for the full deets on running Quast.


Quast output folder:

Interactive report:


Jupyter Notebook (GitHub): 20171023_docker_oly_pacbio_canu_comparisons.ipynb