Earlier this week, I ran TrimGalore!, but set the trimming, incorrectly - due to a copy/paste mistake, as
--non-directional, so I re-ran with the correct settings.
Steven requested that I trim the Geoduck RRBS libraries that we have, in preparation to run them through Bismark.
These libraries were originally created by Hollie Putnam using the TruSeq DNA Methylation Kit (Illumina):
- [project_juvenile_geoduck_OA/Sample_Processing (GitHub)(https://github.com/hputnam/project_juvenile_geoduck_OA/tree/master/Sample_Processing)
All analysis is documented in a Jupyter Notebook; see link below.
Overview of process:
Run TrimGalore! with
Run FastQC and MultiQC on trimmed files.
Copy all data to owl (see Results below for link).
Confirm data integrity via MD5 checksums.