In further attempts to improve our Ostrea lurida genome annotation, I decided to generate a species-specific repeat library for use with MAKER genome annotation using RepeatModeler.
Ran on both versions of our O.lurida genome assemblies. Details on assemblies can be found on our [Genomic Resources wiki (GitHub)(https://github.com/RobertsLab/resources/wiki/Genomic-Resources#ostrea-lurida).
-[Olurida_v081.fa (only contigs >1000bp)(https://owl.fish.washington.edu/halfshell/genomic-databank/Olurida_v081.fa)
Tasks were run on Emu (Apple Xserve; Ubuntu 16.04). All operations were performed in the following Jupyter Notebook (GitHub):
Each run took ~1.5days to complete.
Will use these repeat libraries in subsequent MAKER genome annotations.