Needed to generate a generate a species-specific repeat library for use with MAKER genome annotation using RepeatModeler and the Pgenerosa_v070.fa (see our Genomic Resources wiki for more info) version of the genome.
This was run in a Jupyter Notebook on Emu (Apple Xserve running Ubuntu 16.04LTS).
Jupyter Notebook (GitHub):
This took ~34hrs to complete, but now I have a geoduck repeat library to use with MAKER!
RepeatModeler FastA (1.4MB):