Data Management - Geoduck Phase Genomics Hi-C Data

We received sequencing/assembly data from Phase Genomics.

The data contains two assemblies, produced on two different dates.

All data is here: 20180421_geoduck_hi-c

All FASTQ files (four files; Geoduck_HiC*.gz) were copied to Nightingales:

• https://owl.fish.washington.edu/nightingales/P_generosa/

MD5 checksums were verified and appended to the Nightingales checksum file:

• https://owl.fish.washington.edu/nightingales/P_generosa/checksums.md5

Nightingales sequencing inventory was updated (Google Sheet):

• Nightingales inventory

The two assemblies (and assembly stats) they provided are here:

• 20180403 assembly (FASTA)

  • 20180403 assembly stats (TXT)

• 20180421 assembly (FASTA)

  • 20180421 assembly stats (TXT)

I’ve updated the project-geoduck-genome GitHub wiki with this info.