Quality Trimming - C.gigas Larvae OA BS-Seq Data

2015
Crassostrea gigas larvae OA (2011) bisulfite sequencing
bioinformatics
BS-seq
Crassostrea gigas
FASTQC
ipython notebook
jupyter notebook
larvae
OA
ocean acidification
Pacific oyster
Trimmomatic
Author

Sam White

Published

April 15, 2015

Jupyter (IPython) Notebook: 20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb

NBviewer: 20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb

Trimmed FASTQC

400ppm Index - GCCAAT

20150414_trimmed_2212_lane2_GCCAAT_L002_R1_001_fastqc.html 20150414_trimmed_2212_lane2_GCCAAT_L002_R1_002_fastqc.html 20150414_trimmed_2212_lane2_GCCAAT_L002_R1_003_fastqc.html 20150414_trimmed_2212_lane2_GCCAAT_L002_R1_004_fastqc.html 20150414_trimmed_2212_lane2_GCCAAT_L002_R1_005_fastqc.html 20150414_trimmed_2212_lane2_GCCAAT_L002_R1_006_fastqc.html

1000ppm Index - CTTGTA

20150414_trimmed_2212_lane2_CTTGTA_L002_R1_001_fastqc.html 20150414_trimmed_2212_lane2_CTTGTA_L002_R1_002_fastqc.html 20150414_trimmed_2212_lane2_CTTGTA_L002_R1_003_fastqc.html 20150414_trimmed_2212_lane2_CTTGTA_L002_R1_004_fastqc.html