Data Received - R.philippinarum (Manilla clam) sRNA-seq Data from Azenta Project 30-1035633055
2024
Data Received
sRNA-seq
30-1035633055
Ruditapes philippinarum
Manila clam
Agarose Gel - gDNA Integrity Check of Lake Trout Liver gDNA from 20240712
2024
agarose gel
gDNA
Lake trout
liver
Salvelinus namaycush
PCR - Lake Trout C1Q with Liver gDNA
2024
PCR
Lake trout
C1q
CFX Connect
EpiMark Hot Start Taq
gDNA
liver
Salvelinus namaycush
Primer Design - Lake Trout C1q Gene Sequencing Primers Using Primer3
2024
C1q
lake trout
Salvelinus namaycush
Primer3
primer design
EMBOSS
pyfaidx
Bisulfite PCR - Second Primer Annealing Gradient Test with Lake Trout Bisulfite-treated DNA
2024
bisulfite
BS-PCR
PCR
DNA
Lake troute
Salvelinus namaycush
Data Received - G.macrocephalus Supplemental RNA-seq Data from Azenta Project 30-943133806
Data Received
2024
Gadus macrocephalus
Pacific cod
RNA-seq
Azenta
DNA and RNA Isolations - Gadus macrocephalus Blood
2024
DNA isolation
RNA isolation
Gadus macrocephalus
Pacific cod
blood
Zymo Quick-DNA/RNA Miniprep
Qubit 3.0
Qubit DNA BR Assay
Qubit RNA HS Assay
Bisulfite PCR - Testing Primer Annealing Gradient with Lake Trout Bisulfite-treated DNA
2024
BS-PCR
bisulfite
PCR
DNA
Lake trout
Salvelinus namaycush
Bisulfite Conversion - Lake Trout gDNA Using EZ DNA Methylation Lightning Kit
2024
lake trout
Salvelinus namaycush
bisulfite
EZ DNA Methylation Lightning Kit
Primer Design - Lake Trout C1q Gene Bisulfite Sequencing Primers Using Primer3
2024
C1q
lake trout
Salvelinus namaycush
Primer3
primer design
Samples Submitted - Macs Manilla Clam Egg Samples for sRNA-seq at Azenta
2024
Samples Submitted
Azenta
sRNA-seq
Manila clam
Lajonkairia lajonkairii
Ruditapes philippinarum
eggs
DNA Isolation Quantification and Integrity Assessment - Pacific Cod Blood Samples Test
2024
Pacific cod
Gadus macrocephalus
DNA isolation
DNA quantification
Qubit
DNA BR Assay
agarose gel
DNA Isolation and Quantification - Pacific Cod Blood
2024
Pacific cod
Gadus macrocephalus
blood
DNA isolation
DNA quantification
Qubit
DNA BR assay
DNA Isolation and Quantification - Lake Trout Liver
DNA isolation
2024
lake trout
Salvelinus namaycush
Qubit
DNA BR assay
Samples Received - L.staminea Histology Slides for Mac
2024
Leukoma staminea
littleneck clam
histology
slides
Samples Received
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-lifestage-carryover
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
RNA HS assay
Qubit
RNA isolation
RNA quantification
Directzol RNA miniprep
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-lifestage-carryover
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
RNA HS assay
Qubit
RNA isolation
Directzol RNA Miniprep
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-lifestage-carryover
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
RNA HS assay
Qubit
RNA isolation
Directzol RNA Miniprep
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-lifestage-carryover
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
RNA HS assay
Qubit
RNA isolation
Directzol RNA Miniprep
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-lifestage-carryover
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
RNA HS assay
Qubit
RNA isolation
Directzol RNA Miniprep
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-gigas-carryover
Crassostrea gigas
Pacific oyster
adult
seed
spat
Directzol RNA Miniprep
Qubit
RNA HS Assay
RNA Isolation and Quantification - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-gigas-carryover
Crassostrea gigas
Pacific oyster
adult
seed
spat
Directzol RNA Miniprep
Qubit
RNA HS assay
Samples Submitted - Littleneck Clam Histology Cassettes to UW Pathology Research Services Laboratory
2024
histology
littleneck clam
Pathology Research Services Laboratory
Samples Submitted
RNA Quantification - C.gigas RNA Lifestage Carryover from 20240615 and 20240617
2024
project-gigas-carryover
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
Qubit
RNA HS assay
RNA Isolation - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-gigas-carryover
Directzol RNA Miniprep
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
RNA Isolation - C.gigas Lifestage Carryover Seed Juvenile and Adult
2024
project-gigas-carryover
Directzol RNA Miniprep
Crassostrea gigas
Pacific oyster
seed
adult
juvenile
Differential Gene Expression - G.macrocephalus RNA-seq 9C vs 16C Using edgeR
edgeR
Pacific cod
RNA-seq
differential gene expression
2024
Gadus macrocephalus
Samples Received - Lajonkairia lajonkairii Egg Samples from Mackenzie Gavery
Lajonkairia lajonkairii
manilla clam
2024
Samples Received
Agarose Gel - G.macrocephalus gDNA from 20240521
agarose
gDNA
Gadus macrocephalus
Pacific cod
gel
2024
DNA Isolation - Pacific cod liver
DNA isolation
Pacific cod
liver
Gadus macrocephalus
DNA quantification
Qubit
2024
Samples Submitted - Pacific Cod 40 Tissue Samples for WGBS at Psomagen
psomagen
WGBS
2024
Pacific cod
Gadus macrocephalus
BS-seq
bisulfite
Samples Submitted
qPCR Analysis - C.gigas Lifestages Carryover from 20240325
2024
qPCR
Crassotrea gigas
Pacific oyster
qPCRs - C.gigas Lifestage Carryover cDNA
qPCR
SsoFast
CFX Connect
HSP70
HSP90
GAPDH
VIPERIN
ATPsynthase
cGAS
DMNT1
citrate synthase
Crassostrea gigas
Pacific oyster
cDNA
Reverse Transcription - C.gigas Lifestage Carryover Seed and Spat
reverse transcription
Lifestage carryover
Crassostrea gigas
Pacific oyster
cDNA
M-MLV
2024
RNA Isolation - C.gigas Lifestage Carryover Seed and Spat
RNA isolation
Crassostrea gigas
Lifestage carryover
Pacific oyster
2024
SRA Submission - CEABIGR WGBS and RNA-seq
SRA
CEABIGR
Crassostrea virginica
Eastern oyster
RNAseq
WGBS
2024
Data Received - Pacific cod RNA-seq Azenta Project 30-943133806
Azenta
RNA-seq
2024
Pacific cod
Gadus macrocephalus
30-943133806
Data Received
Figure Updates - CEABIGR Spurious Transcription Calcs and Plotting Using Exon Sum Threshold
CEABIGR
2024
plot
Eastern oyster
Crassostrea virginica
Data Exploration - CEABIGR Spurious Transcription Calculations and Plotting
2024
CEABIGR
plot
Eastern oyster
Crassostrea virginica
Samples Submitted - Gadus macrocephalus liver tissues to Azenta for RNA-seq
2023
Gadus macrocephalus
Pacific cod
Azenta
RNA-seq
Samples Submitted
liver
spleen
gill
blood
Computer Maintenance - Replace Failing HDDs in Synology RX1217 Expansion Unit on Gannet
gannet
synology
RX1217
HDDs
2023
computer maintenance
Transcriptome Annotation - M.magister De Novo Transcriptome Assembly Using Trinotate on Mox
mox
2023
Metacarcinus magister
Dungenss crab
Trinotate
transcriptome
annotation
Transcriptome Annotation - M.magister De Novo Transcriptome Assembly for DuMOAR Project Using DIAMOND BLASTx on Mox
mox
DIAMOND
BLASTx
transcriptome
2023
DuMOAR
Dungeness crab
Metacarcinus magister
Assembly Comparisons - Ostrea lurida Non-scaffold Genome Assembly Comparisons Using Quast on Swoose
2021
Olympia Oyster Genome Assembly
Genome Submission - Validation of Olurida_v081.fa and Annotated GFFs Prior to Submission to NCBI
2021
Olympia Oyster Genome Assembly
ENA Submission - Ostrea lurida draft genome Olurida_v081.fa
2020
Olympia Oyster Genome Sequencing
Data Received - C.bairdi RNAseq Data from Genewiz
2020
Data Received
Tanner Crab RNAseq
Data Wrangling - Renaming, Splitting, and Feature Counts of Updated Pgenerosa_v074 GenSAS Merged GFF
2019
Geoduck Genome Sequencing
Data Received - C.bairdi RNAseq Day9-12-26 Infected-Uninfected
2019
Tanner Crab RNAseq
Data Received