Quality Trimming - LSU C.virginica Oil Spill MBD BS-Seq Data

2015
LSU C.virginica Oil Spill MBD BS Sequencing
BS-seq
Crassostrea virginica
Eastern oyster
FASTQC
ipython notebook
jupyter notebook
MBD-Seq
NGS sequencing
oil
Trimmomatic
Author

Sam White

Published

April 15, 2015

Jupyter (IPython) Notebook: 20150414_C_virginica_LSU_Oil_Spill_Trimmomatic_FASTQC.ipynb

NBviewer: 20150414_C_virginica_LSU_Oil_Spill_Trimmomatic_FASTQC.ipynb

Trimmed FASTQC

NB3 No oil Index - ACAGTG

20150414_trimmed_2112_lane1_ACAGTG_L001_R1_001_fastqc.html 20150414_trimmed_2112_lane1_ACAGTG_L001_R1_002_fastqc.html

NB6 No oil Index - GCCAAT

20150414_trimmed_2112_lane1_GCCAAT_L001_R1_001_fastqc.html 20150414_trimmed_2112_lane1_GCCAAT_L001_R1_002_fastqc.html

NB11 No oil Index - CAGATC

20150414_trimmed_2112_lane1_CAGATC_L001_R1_001_fastqc.html 20150414_trimmed_2112_lane1_CAGATC_L001_R1_002_fastqc.html 20150414_trimmed_2112_lane1_CAGATC_L001_R1_003_fastqc.html

HB2 25,000ppm oil Index - ATCACG

20150414_trimmed_2112_lane1_ATCACG_L001_R1_001_fastqc.html 20150414_trimmed_2112_lane1_ATCACG_L001_R1_002_fastqc.html 20150414_trimmed_2112_lane1_ATCACG_L001_R1_003_fastqc.html

HB16 25,000ppm oil Index - TTAGGC

20150414_trimmed_2112_lane1_TTAGGC_L001_R1_001_fastqc.html 20150414_trimmed_2112_lane1_TTAGGC_L001_R1_002_fastqc.html

HB30 25,000ppm oil Index - TGACCA

20150414_trimmed_2112_lane1_TGACCA_L001_R1_001_fastqc.html