Repeat Library Construction - O.lurida RepeatModeler v1.0.11

In further attempts to improve our Ostrea lurida genome annotation, I decided to generate a species-specific repeat library for use with MAKER genome annotation using RepeatModeler.

Ran on both versions of our O.lurida genome assemblies. Details on assemblies can be found on our Genomic Resources wiki (GitHub).

• Olurida_v080.fa

• Olurida_v081.fa (only contigs >1000bp)

Tasks were run on Emu (Apple Xserve; Ubuntu 16.04). All operations were performed in the following Jupyter Notebook (GitHub):

• 20181022_emu_oly_repeatmodeler.ipynb

---

RESULTS

Each run took ~1.5days to complete.

Output folders:

• 20181022_Olurida_v080_repeatmodeler/

• 20181022_Olurida_v081_repeatmodeler/

Repeats FastAs:

• Ostrea_lurida_v080-families.fa (1.3MB)

• Ostrea_lurida_v081-families.fa (1.3MB)

Will use these repeat libraries in subsequent MAKER genome annotations.