SRA Submission - Ronits C.gigas Ploidy WGBS

A few days ago, we received the whole genome bisulfite sequencing (WBGS) data (20201110) from Ronit’s C.gigas diploid/triploid dessication/heat stress experiment (GitHub repo).

Now, I need to get these submitted to the NCBI short read archive (SRA).

For all publications, we should reference the SRA BioProject:

• PRJNA678408

A summary table is provided below which includes individual SRA accessions for each sample:

Library_Name	SeqID	Tissue	Ploidy	Dessication	Heat_Stress	Library_kit	SRA_BioProject	SRA_accession
D11-C	zr3534_1	ctenidia	diploid	yes	no	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508698
D12-C	zr3534_2	ctenidia	diploid	yes	no	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508699
D13-C	zr3534_3	ctenidia	diploid	yes	no	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508700
D19-C	zr3534_4	ctenidia	diploid	yes	yes	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508701
D20-C	zr3534_5	ctenidia	diploid	yes	yes	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508702
T11-C	zr3534_6	ctenidia	triploid	yes	no	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508703
T12-C	zr3534_7	ctenidia	triploid	yes	no	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508704
T13-C	zr3534_8	ctenidia	triploid	yes	no	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508705
T19-C	zr3534_9	ctenidia	triploid	yes	yes	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508706
T20-C	zr3534_10	ctenidia	triploid	yes	yes	Zymo-Seq WGBS Library Kit (Cat#: D5465)	PRJNA678408	SRX9508707