Per this GitHub Issue, I’ve compiled a summary table, with links, of all of our Panopea generosa (Pacific geoduck) RNAseq data as it exists in NCBI. This will be a “dynamic” notebook entry, whereby I will update this post continually as we acquire new data and/or change the information we’d like to have here.
| Run | BioSample | Experiment | Library_ID | Sample_Name | Tissue/Treatment | Sequencer |
|---|---|---|---|---|---|---|
| SRR12218868 | SAMN15524261 | SRX8729323 | Geoduck-heart-RNA | geoduck-20150811-heart | heart | HiSeq 4000 |
| SRR12218869 | SAMN15524260 | SRX8729322 | Geoduck-gonad-RNA | geoduck-20150811-gonad | gonad | HiSeq 4000 |
| SRR12218870 | SAMN15524251 | SRX8729321 | Geoduck-ctenidia-RNA | geoduck-20150811-ctenidia | ctenidia | HiSeq 4000 |
| SRR12226692 | SAMN15524260 | SRX8735427 | NR006 | geoduck-20150811-gonad | gonad | NovaSeq 6000 |
| SRR12226693 | SAMN15524251 | SRX8735426 | NR012 | geoduck-20150811-ctenidia | ctenidia | NovaSeq 6000 |
| SRR12207404 | SAMN15517239 | SRX8718216 | EPI_124 | EPI_124 | juvenile(ambient) | HiSeq 4000 |
| SRR12207405 | SAMN15517238 | SRX8718215 | EPI_123 | EPI_123 | juvenile(ambient) | HiSeq 4000 |
| SRR12207406 | SAMN15517237 | SRX8718214 | EPI_116 | EPI_116 | juvenile(super-low) | HiSeq 4000 |
| SRR12207407 | SAMN15517236 | SRX8718213 | EPI_115 | EPI_115 | juvenile(super-low) | HiSeq 4000 |
| SRR12227930 | SAMN15517239 | SRX8736520 | NR019 | EPI_124 | juvenile(ambient) | NovaSeq 6000 |
| SRR12227931 | SAMN15517237 | SRX8736519 | NR005 | EPI_116 | juvenile(super-low) | NovaSeq 6000 |
| SRR12212519 | SAMN11259647 | SRX8723123 | EPI_99 | EPI_99 | 10k day 5, post-fertilization larvae | HiSeq 4000 |
| SRR12227929 | SAMN11259647 | SRX8736518 | NR021 | EPI_99 | 10k day 5, post-fertilization larvae | NovaSeq 6000 |
| SRR8788211 | SAMN11259647 | SRX5578033 | NR021 | EPI_99 | 10k day 5, post-fertilization larvae | NovaSeq 6000 |