Data Wrangling - P.generosa Genome GFF Conversion to GTF Using gffread

Steven asked in this GitHub Issue to convert our Panopea generosa (Pacific geoduck) genomic GFF to a GTF for use in the 10x Genomics Cell Ranger software. This conversion was performed using GffRead in a Jupyter Notebook.

Jupyter Notebook:

• GitHub: 20220301-pgen-gff_to_gtf.ipynb

• nbviewer: 20220301-pgen-gff_to_gtf.ipynb

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RESULTS

Output folder:

• 20220301-pgen-gff_to_gtf/

  • GTF

    • Panopea-generosa-vv0.74.a4-merged-2019-10-07-4-46-46.gtf (86M)

      • MD5: 2926b2a9029eb98775b75883cbf199af