Read Extractions - M.magister MEGAN FastA to FastQ Arthropoda and Unassigned Reads

Metacarcinus magister
Dungeness crab
MEGAN
2023
DuMOAR
Author

Sam White

Published

July 30, 2023

After getting Arthropoda and Unassigned reads extracted to FastA format (notebook entry) using MEGAN6 Community Edition, the next step was to use the FastA files to extract reads in FastQ format. I used seqtk to do this. The process is documented in the Jupyter Notebook below.

Jupyter Notebook:

RESULTS

Output folder:

FastQ Files