Daily Bits - June 2024

20240618

In lab

• Isolated and quantified RNA (Notebook) for `project-lifestage-carryover project (GitHub repo).

• Submitted littleneck clam histology cassettes for Mac (Notebook).

• Helped get Colby with the resazurin assays.

20240617

In lab

• Isolated RNA (Notebook) and quantified RNA (Notebook) for `project-lifestage-carryover project (GitHub repo).

• Helped get Colby started with the resazurin assay protocols/equipment.

• Ran through lab safety with Colby and Madeline.

20240615

In lab

• Isolated RNA (Notebook) for `project-lifestage-carryover project (GitHub repo).

• Replaced dead HDD in Gannet expansion unit (Noteobok).

20240612

• Finished edgeR analysis of Pacific cod RNA-seq (Notebook).

20240611

• Worked on edgeR analysis of Pacific cod RNA-seq (Notebook).

20240610

In lab

• Began prepping for RNA isolations for the C.gigas lifestage carryover project (GitHub Issue). Spent majority of time labeling tubes.

CEABIGR

• CEABIGR manuscript revisions meeting.

20240607

Hack-a-thon

• Miscellaneous stuff. Not too many people in attendance.

20240606

Hack-a-thon

• In lab. Cleaned up boxes and stuff leftover from new Synology NAS install.

• Updated READMEs in a few different repos.

20240605

Hack-a-thon

• Worked on coral E5 manuscript.

• Worked on Pychnopodia BLASTing of unmapped reads.–

• Miscellaneous repo maintenance.

20240604

Hack-a-thon

• In lab. Got Manilla clam egg samples from Mac.

• Helped Chris with transferring data from her computer to Raven.

20240603

Hack-a-thon

• Helped Steven get SSH authorization for GitHub.

• Tried to sign up with .edu email address for free access to GitHub Copilot (not sure if this worked yet).

• Finished notebook for G.macrocephalus gDNA gel.

• Dealt with annoying/weird notebook rendering issue.

• Began downloading NCBI nt BLAST database (literally took the entire day).