Basics

A suite of core fundamental Bioinformatic workflows.

Shell

• Roberts Lab Bash Tutorial — a self-paced, hands-on walkthrough of the Unix shell (navigating the file system, creating files, wildcards, redirection, and pipes). Start here if the command line is new to you.
• Introducing the Shell
• Introduction to the Command Line for Genomics

Sequence Alignment - BLAST

Tutorial from FISH546 - starting from a fasta and downloading blast.

FastQC

Tutorial from FISH546 - running FastQC from Jupyter.