Skip to content

DNA Methylation Analysis

Bismark

See also the official documentation.

User Guides

1) http://felixkrueger.github.io/Bismark/Docs/
2) https://www.bioinformatics.babraham.ac.uk/projects/bismark/

Use cases from our lab

https://github.com/RobertsLab/code/blob/master/20-bismark.sh

Diagram


Methylkit

See also the official documentation - MethylKit Vignette

Use cases from our lab

Diagram

image Flowchart of possible operations by methylKit. A summary of the most importantmethylKit features is shown in a flow chart. It depicts the main features of methylKitand the sequential relationship between them. The functions that could be used for thosefeatures are also printed in the boxes. - Figure and caption from Akalin et al. 2012