Quick start guide to running a job on Klone
See the "Running a job" instructions for a more detailed description of how set up and run a job on Klone.
-
SSH into Klone:
-
ssh <UW_NetID>@klone.hyak.uw.edu
- You'll need to replace
<UW_NetID>
(including the<
and>
) with your UW NetID.
- You'll need to replace
-
Create a SLURM script (e.g.
20240917-cgig-ncbi-blastx.sh
) with the following commands (these come after the SLURM header):module load apptainer apptainer exec \ --home $PWD \ --bind /mmfs1/home/ \ --bind /mmfs1/gscratch/ \ /gscratch/srlab/containers/srlab-bioinformatics-container-<git_commit_hash>.sif \ <commands-script.sh>
- You'll need to replace anything in
<>
(including the<
and>
) with your specific requirements. - `
is a Bash script containing all of the commands/programs you wan to run.
- You'll need to replace anything in
-
Submit job to SLURM scheduler (i.e. start your job):
-
sbatch <slurm_script_name.sh>
- You'll need to replace anything in
<>
(including the<
and>
) with your specific requirements.
- You'll need to replace anything in
-
For more information, check out the following:
-
Roberts Lab Klone guides: